deepcrayon
/
spack
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Activity

cpat: new package @3.0.4 (#40022) 

* cpat: new package @3.0.4

* Update package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
develop
George Young 2023-09-18 17:37:21 +01:00 committed by GitHub
parent d5dd4b8b5d
commit ba81ef50f5
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 24 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

24
var/spack/repos/builtin/packages/cpat/package.py 100644
View File

@ -0,0 +1,24 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Cpat(PythonPackage):
"""CPAT is an alignment-free method to predict RNA coding potential using four sequence
features"""
homepage = "https://cpat.readthedocs.io/"
pypi = "CPAT/CPAT-3.0.4.tar.gz"
version("3.0.4", sha256="6d832f20729f8fc814384a27a4fcebcf81b11c0e6d80a404b4c4860d17e7d935")
depends_on("py-setuptools", type="build")
depends_on("py-nose@0.10.4:", type="build")
depends_on("py-cython@0.17:", type="build")
depends_on("py-numpy", type=("build", "run"))
depends_on("py-pysam", type=("build", "run"))
depends_on("r", type="run")