Commit Graph

855 Commits (develop)

Author SHA1 Message Date
Scott Wittenburg cbabdf283c
gitlab ci: submit the correct audience for protected publish jobs (#40046) 2023-09-15 20:09:18 +00:00
Scott Wittenburg 579df768ca
gitlab ci: Put Cray binaries in public mirrors (#39938) 2023-09-14 15:11:29 -06:00
Dan LaManna 6a249944f5
Add OIDC tokens to gitlab-ci jobs (#39813)
* Add OIDC tokens to gitlab-ci jobs

This should allow us to start issuing just-in-time generated
credentials for CI jobs that need to modify binary mirrors. The "aud"
claim of the token describes what the token is allowed to do. The
claim is verified against a set of rules on the IAM role using signed
information from GitLab. See spack-infrastructure for the claim
verification logic.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-09-14 09:59:25 -06:00
Harmen Stoppels 6838ee6bb8
Add efficient `deptype` flag and `spack.deptypes` module (#39472)
This commit replaces the internal representation of deptypes with `int`, which is more compact
and faster to operate with.

Double loops like:
```
any(x in ys for x in xs)
```
are replaced by constant operations bool(xs & ys), where xs and ys are dependency types. 

Global constants are exposed for convenience in `spack.deptypes`
2023-09-14 12:25:24 +02:00
Massimiliano Culpo d50f296d4f
data-vis-sdk: make llvm~libomptarget the default (#40007)
Currently the configuration of the pipeline is such that
there are multiple "optimal" solutions. This is due to
the pipeline making ~lld the default for LLVM, but leaving
+libomptarget from package.py

Since LLVM recipe has a:

conflicts("~lld", "+libomptarget")

clingo is forced to change one of the two defaults, and
the penalty for doing so is the same for each. Hence, it
is random whether we'll get +libomptarget+lld
or ~libomptarget~lld.

This fixes it by changing also the default for libomptarget.
2023-09-14 09:19:47 +02:00
Harmen Stoppels 2c13361b09
gitlab ci: temporarily disable darwin aarch64 (#39974)
as there are no or few runners available
2023-09-13 11:11:33 +02:00
Scott Wittenburg fa9acb6a98
ci: Tag reindex job to match the image architecture (#39958) 2023-09-12 16:33:56 -04:00
Tamara Dahlgren c10ff27600
CI/Add superlu-dist to broken stand-alone tests due to hang (#38908)
* Add superlu-dist to broken stand-alone CI tests
* Revert "disable superlu test (#38894)"
  This reverts commit e16397b5d8.
2023-09-12 11:09:25 -07:00
Scott Wittenburg 516f0461b8
gitlab ci: Use image with awscli for rebuild-index job (#39636)
Instead of pointing to the image on DockerHub, which rate limits us and
causes pipeline failures durying busy times, use the version at ghcr.

And we might as well use the ghcr version everywhere else too.
2023-09-11 18:03:11 +02:00
Todd Gamblin 45d149c7d3
bugfix: only complete aliases for potential aliases (#39887)
Smart alias completion introduced in #39499 wasn't as smart as it needed to be, and
would complete any invalid command prefix and some env names with alias names.

- [x] don't complete aliases if there are no potential completions
      e.g., don't convert `spack isnotacommand` -> `spack concretize`

- [x] don't complete with an aliases if we're not looking at a top-level subcommand.
2023-09-08 12:51:26 +02:00
Massimiliano Culpo 39b9f214a8
Speed-up `spack external find` execution (#39843)
* Perform external spec detection with multiple workers

The logic to perform external spec detection has been refactored
into classes. These classes use the GoF "template" pattern to account
for the small differences between searching for "executables" and
for "libraries", while unifying the larger part of the algorithm.

A ProcessPoolExecutor is used to parallelize the work.

* Speed-up external find by tagging detectable packages automatically

Querying packages by tag is much faster than inspecting the repository,
since tags are cached. This commit adds a "detectable" tag to every
package that implements the detection protocol, and external detection
uses it to search for packages.

* Pass package names instead of package classes to workers

The slowest part of the search is importing the Python modules
associated with candidate packages. The import is done serially
before we distribute the work to the pool of executors.

This commit pushes the import of the Python module to the job
performed by the workers, and passes just the name of the packages
to the executors.

In this way imports can be done in parallel.

* Rework unit-tests for Windows

Some unit tests were doing a full e2e run of a command
just to check a input handling. Make the test more
focused by just stressing a specific function.

Mark as xfailed 2 tests on Windows, that will be fixed
by a PR in the queue. The tests are failing because we
monkeypatch internals in the parent process, but the
monkeypatching is not done in the "spawned" child
process.
2023-09-08 09:25:50 +02:00
kwryankrattiger 8ec1657136
CI Timing Statistics (#38598)
* Write timing information for installs from cache

* CI: aggregate and upload install_times.json to artifacts

* CI: Don't change root directory for artifact generation

* Flat event based timer variation

Event based timer allows for easily starting and stopping timers without
wiping sub-timer data. It also requires less branching logic when
tracking time.

The json output is non-hierarchical in this version and hierarchy is
less rigidly enforced between starting and stopping.

* Add and write timers for top level install

* Update completion

* remove unused subtimer api

* Fix unit tests

* Suppress timing summary option

* Save timers summaries to user_data artifacts

* Remove completion from fish

* Move spack python to script section

* Write timer correctly for non-cache installs

* Re-add hash to timer file

* Fish completion updates

* Fix null timer yield value

* fix type hints

* Remove timer-summary-file option

* Add "." in front of non-package timer name

---------

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-09-07 15:41:31 -05:00
Harmen Stoppels d80bc70481
gitlab: set cache and config dir in top-level file (#39829) 2023-09-06 08:16:35 +02:00
Harmen Stoppels 5a43f4ba55
Set backtrace in ci (#39737) 2023-09-05 09:44:14 +02:00
John W. Parent ca872f9c34
Windows: fix pwsh env activate/deactivate; load/unload (#39118)
These commands are currently broken on powershell (Windows) due to
improper use of the InvokeCommand commandlet and a lack of direct
support for the `--pwsh` argument in `spack load`, `spack unload`,
and `spack env deactivate`.
2023-09-01 11:36:27 -07:00
Harmen Stoppels acb02326aa
ASP-based solver: add hidden mode to ignore versions that are moving targets, use that in CI (#39611)
Setting the undocumented variable SPACK_CONCRETIZER_REQUIRE_CHECKSUM
now causes the solver to avoid accounting for versions that are not checksummed.

This feature is used in CI to avoid spurious concretization against e.g. develop branches.
2023-08-31 08:09:37 +00:00
Todd Gamblin 6693dc5eb8 completion: make bash completion work in zsh
`compgen -W` does not behave the same way in zsh as it does in bash; it seems not to
actually generate the completions we want.

- [x] add a zsh equivalent and `_compgen_w` to abstract it away
- [x] use `_compgen_w` instead of `compgen -W`
2023-08-30 12:42:31 -07:00
Todd Gamblin 396f219011 completion: add alias handling
Bash completion is now smarter about handling aliases. In particular, if all completions
for some input command are aliased to the same thing, we'll just complete with that thing.

If you've already *typed* the full alias for a command, we'll complete the alias.

So, for example, here there's more than one real command involved, so all aliases are
shown:

```console
$ spack con
concretise    concretize    config        containerise  containerize
```

Here, there are two possibilities: `concretise` and `concretize`, but both map to
`concretize` so we just complete that:

```console
$ spack conc
concretize
```

And here, the user has already typed `concretis`, so we just go with it as there is only
one option:

```console
 spack concretis
concretise
```
2023-08-30 12:42:31 -07:00
Todd Gamblin a3ecd7efed Add `concretise` and `containerise` aliases for our UK users
From a user:

> Aargh.
> ```
> ==> Error: concretise is not a recognized Spack command or extension command; check with `spack commands`.
> ```

To make things easier for our friends in the UK, this adds `concretise` and
`containerise` aliases for the `spack concretize` and `spack containerize` commands.

- [x] add aliases
- [x] update completions
2023-08-30 12:42:31 -07:00
Harmen Stoppels 5138c71d34
Revert "Add style tool to fix fish file formatting (#39155)" (#39680)
This reverts commit 70c71e8f93.
2023-08-29 18:12:19 +02:00
Adam J. Stewart 70c71e8f93
Add style tool to fix fish file formatting (#39155) 2023-08-28 22:16:44 -05:00
kwryankrattiger cef59ad0bf
Patch VTK to enable python 3.8 in VTK 8.2 (#38735)
* VTK: Add patch for python 3.8 support

* CI: Re-enable VisIt in CI

* Configure spec matrix for stack with VisIt

* Add pugixml dep for 8.2.0

* Make VTK and ParaView consistent on proj dep

* OpenMPI 3: provides MP support by default

* Add details on proj dep in ParaView

* Add python 3.8 to test mock repo

* Patches to get VisIt VTK interface

* CI: Disable VisIt with GUI in DAV
2023-08-28 16:56:31 -05:00
Harmen Stoppels 8a3d98b632
Remove mxnet from darwin aarch64 since theres no supported release (#39644) 2023-08-28 12:21:10 +02:00
Dom Heinzeller 31d5f56913
Add --fail-fast option for generating build caches (#38496)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-23 11:20:33 +02:00
eugeneswalker 4c7748e954
amrex+sycl: restructure constraint on %oneapi (#39451) 2023-08-16 11:49:32 -06:00
Massimiliano Culpo 9bb5cffc73 Change semantic for providers
If a possible provider is not used to satisfy a vdep,
then it's not a provider of that vdep.
2023-08-15 15:54:37 -07:00
Massimiliano Culpo 3f3c75e56a ecp-data-viz-sdk: fix building with new encoding 2023-08-15 15:54:37 -07:00
Massimiliano Culpo 9733bb3da8 We cannot require "mpich" as an mpi provider and ask for openmpi 2023-08-15 15:54:37 -07:00
Harmen Stoppels a2a52dfb21
Fix containerize view symlink issue (#39419) 2023-08-14 16:02:48 +00:00
eugeneswalker ed3aaafd73
e4s cray sles ci: expand spec list (#39081)
* e4s cray sles ci: expand spec list

* flux-core: disable until python+gary-sles issue is resolved
2023-08-11 23:42:10 +00:00
Cristian Di Pietrantonio 09ca71dbe0
kokkos: rename 'std' variant to 'cxxstd'. (#39319)
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-11 07:18:02 +00:00
Todd Gamblin ea082539e4
Revert "package import: remove magic import line (#39183)" (#39380)
This reverts commit 8e7c53a8ba.
2023-08-11 09:04:40 +02:00
Axel Huebl 7d444038ee
AMReX: 23.06+ Multi-Dim Support (#37695)
* AMReX: 23.06+ Multi-Dim Support

This updated the Spack package to allow to install AMReX, modules of
AMReX in E4S deployments and dependent packages with support for
multiple dimensions. Due to an upstream change in AMReX, we do not
longer need to ship three, binary incompatible package variants.

* [E4S] oneAPI AMReX < 23.06 Variant

Work-around the auto-concretization to the multi-dim of `dimensions`,
which only in 23.06+ became a multi-variant.

* e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-09 11:25:43 -07:00
Harmen Stoppels 8e7c53a8ba
package import: remove magic import line (#39183) 2023-08-09 14:28:06 +00:00
Adam J. Stewart 39d4c402d5
Fix suffix of tab completion scripts (#39154) 2023-08-09 08:28:55 -05:00
Jonathon Anderson 9aa3b4619b
containerize: ensure bootstrap images contain all system dependencies (#36818)
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09 09:46:59 +02:00
eugeneswalker 5d70c0f100
e4s ci: add libpressio (#34222)
* e4s ci: add libpressio

* libpressio ~cuda, +cuda: add +mgard
2023-08-08 12:03:23 -07:00
Adam J. Stewart 7327d2913a
ML CI: get more packages working on macOS (#39199) 2023-08-08 10:59:24 +02:00
kwryankrattiger b54d286b4a
CI: remove redundant sections (#38514)
Refactor gitlab ci configs so that mac and cray jobs can reuse as much higher level
configuration as possible.

* CI: remove redundant sections
* CI: Include base linux CI configs in cray stacks

Relocation and runner mapping is consistent between cray and linux runners.

* Export user cache path in before script
* CI: add GPG root for mac runners
* Disable user configs

Metal runners share a ~ directory

* Disable user config and add configs in activate env
2023-08-07 10:23:16 -06:00
kwryankrattiger 0b4631a774
CI: Refactor ci reproducer (#37088)
* CI: Refactor ci reproducer

* Autostart container
* Reproducer paths match CI paths
* Generate start scripts for docker and reproducer

* CI: Add interactive and gpg options to reproduce-build

* Interactive will determine if the docker container persists
  after running reproduction.
* GPG path/url allow downloading GPG keys needed for binary
  cache download validation. This is important for running
  reproducer for protected CI jobs.

* Add exit_on_failure option to CI scripts

* CI: Add runtime option for reproducer
2023-08-02 09:51:12 -07:00
Wouter Deconinck a14f4b5a02
feat: move -N/--namespace(s) to common args, allow in `buildcache list` (#36719)
`spack buildcache list` did not have a way to display the namespace of
packages in the buildcache. This PR adds that functionality.

For consistency's sake, it moves the `-N/--namespace` arg definition to
the `common/arguments.py` and modifies `find`, `solve`, `spec` to use
the common definition.

Previously, `find` was using `--namespace` (singular) to control whether
to display the namespace (it doesn't restrict the search to that
namespace). The other commands were using `--namespaces` (plural). For
backwards compatibility and for consistency with `--deps`, `--tags`,
etc, the plural `--namespaces` was chosen. The argument parser ensures
that `find --namespace` will continue to behave as before.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-02 11:16:14 +00:00
Alec Scott d4f41b51f4
Add `spack checksum --verify`, fix `--add` (#38458)
* Add rewrite of spack checksum to include --verify and better add versions to package.py files
* Fix formatting and remove unused import
* Update checksum unit-tests to correctly test multiple versions and add to package
* Remove references to latest in stage.py
* Update bash-completion scripts to fix unit tests failures
* Fix docs generation
* Remove unused url_dict argument from methods
* Reduce chance of redundant remote_versions work
* Add print() before tty.die() to increase error readablity
* Update version regular expression to allow for multi-line versions
* Add a few unit tests to improve test coverage
* Update command completion
* Add type hints to added functions and fix a few py-lint suggestions
* Add @no_type_check to prevent mypy from failing on pkg.versions
* Add type hints to format.py and fix unit test
* Black format lib/spack/spack/package_base.py
* Attempt ignoring type errors
* Add optional dict type hint and declare versions in PackageBase
* Refactor util/format.py to allow for url_dict as an optional parameter
* Directly reference PackageBase class instead of using TypeVar
* Fix comment typo

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2023-07-31 21:49:43 +00:00
Scott Wittenburg 2c74b433aa
ci: Make signing requirement explicit (#38995)
Instead of inferring whether to sign binaries, make it explicit,
and fail rebuild jobs early if signing is required but cannot be
accomplished.
2023-07-26 09:16:15 -06:00
Scott Wittenburg 12d86ffb6a
ci: fix stack mirror urls (#38882) 2023-07-24 20:20:08 +00:00
eugeneswalker 366c798b87
e4s oneapi ci: build with latest 2023.2 based image (#39048) 2023-07-22 09:22:02 -07:00
百地 希留耶 90ac0ef66e
Implement fish completion (#29549)
* commands: provide more information to Command

* fish: Add script to generate fish completion

* fish: auto prepend `spack` command to avoid duplication

* fish: impove completion generation code readability

* commands: replace match-case with if-else

* fish: fix optspec variable name prefix

* fish: fix return value in get_optspecs

* fish: fix return value in get_optspecs

* format: split long line and trim trailing space

* bugfix: replace f-string with interpolation

* fish: compete more specs and some fixes

* fish: complete hash spec starts with /

* fish: improve compatibility

* style: trim trailing whitespace

* commands: add fish to update args and update tests

* commands: add fish completion file

* style: merge imports

* fish: source completion in setup-env

* fish: caret only completes dependencies

* fish: make sure we always get same order of output

* fish: spack activate
only show installed packages that have extensions

* fish: update completion file

* fish: make dict keys sorted

* Blacken code

* Fix bad merge

* Undo style changes to setup-env.fish

* Fix unit tests

* Style fix

* Compatible with fish_indent

* Use list for stability of order

* Sort one more place

* Sort more things

* Sorting unneeded

* Unsort

* Print difference

* Style fix

* Help messages need quotes

* Arguments to -a must be quoted

* Update types

* Update types

* Update types

* Add type hints

* Change order of positionals

* Always expand help

* Remove shared base class

* Fix type hints

* Remove platform-specific choices

* First line of help only

* Remove unused maps

* Remove suppress

* Remove debugging comments

* Better quoting

* Fish completions have no double dash

* Remove test for deleted class

* Fix grammar in header file

* Use single quotes in most places

* Better support for remainder nargs

* No magic strings

* * and + can also complete multiple

* lower case, no period

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-22 08:55:12 -05:00
eugeneswalker 4edeabb2a2
e4s ci: add cray-sles ministack (#38744)
* e4s ci: add cray-sles ministack

* fix typo: variables, not env
2023-07-21 05:57:27 -07:00
Xavier Delaruelle d9fbdfbee9
modules: use curly braces to enclose value in Tcl modulefile (#38375)
Use curly braces instead of quotes to enclose value or text in Tcl
modulefile. Within curly braces Tcl special characters like [, ] or $
are treated verbatim whereas they are evaluated within quotes.

Curly braces is Tcl recommended way to enclose verbatim content [1].

Note: if curly braces charaters are used within content, they must be
balanced. This point has been checked against current repository and no
unbalanced curly braces has been spotted.

Fixes #24243

[1] https://wiki.tcl-lang.org/page/Tcl+Minimal+Escaping+Style
2023-07-19 17:57:37 +02:00
Massimiliano Culpo 14f3297cca
Ensure the bootstrap store has a padding length of zero (#38975)
Without this PR, padded length was propagating from user configuration to
bootstrap configuration, and was causing the issue reported in #38963
2023-07-18 23:49:22 +02:00
eugeneswalker 515b53ac50
e4s cray: expand spec list (#38947)
* e4s cray: expand spec list

* unzip: require %gcc

* remove datatrasnferkit
2023-07-18 20:04:26 +00:00