From 3f4b4ae717d27b1140a5fb7993d00707a6b6343d Mon Sep 17 00:00:00 2001
From: ml server <ml@spacecruft.org>
Date: Fri, 21 Feb 2020 20:59:34 -0700
Subject: [PATCH] jupyter working with explicit filename... data_MATCH.csv

---
 karoo_gp.ipynb | 51 +++++++++++++++++++++++++++++++-------------------
 1 file changed, 32 insertions(+), 19 deletions(-)

diff --git a/karoo_gp.ipynb b/karoo_gp.ipynb
index 7fb3a49..5c599d7 100644
--- a/karoo_gp.ipynb
+++ b/karoo_gp.ipynb
@@ -2,21 +2,9 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "ename": "ModuleNotFoundError",
-     "evalue": "No module named 'karoo_gp_base_class'",
-     "output_type": "error",
-     "traceback": [
-      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
-      "\u001b[0;31mModuleNotFoundError\u001b[0m                       Traceback (most recent call last)",
-      "\u001b[0;32m<ipython-input-1-f6e2bcf4ec4a>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m     50\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0msys\u001b[0m\u001b[0;34m;\u001b[0m \u001b[0msys\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mpath\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mappend\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'modules/'\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;31m# add directory 'modules' to the current path\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     51\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0margparse\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 52\u001b[0;31m \u001b[0;32mimport\u001b[0m \u001b[0mkaroo_gp_base_class\u001b[0m\u001b[0;34m;\u001b[0m \u001b[0mgp\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mkaroo_gp_base_class\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mBase_GP\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m     53\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     54\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msystem\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'clear'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
-      "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'karoo_gp_base_class'"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Karoo GP (desktop + server combined)\n",
     "# Use Genetic Programming for Classification and Symbolic Regression\n",
@@ -256,19 +244,44 @@
     "\tevolve_point = int(float(args.evo_p) * tree_pop_max)\n",
     "\tevolve_branch = int(float(args.evo_b) * tree_pop_max)\n",
     "\tevolve_cross = int(float(args.evo_c) * tree_pop_max)\n",
-    "\tfilename = str(args.filename)\n",
-    "\t\n",
+    "\t#filename = str(args.filename)\n",
+    "\tfilename='files/data_MATCH.csv'\n",
     "\tdisplay = 's' # display mode is set to (s)ilent\n",
     "\tprecision = 6 # number of floating points for the round function in 'fx_fitness_eval'\n",
     "\tswim = 'p' # require (p)artial or (f)ull set of features (operators) for each Tree entering the gene_pool\n",
     "\tmode = 's' # pause at the (d)esktop when complete, awaiting further user interaction; or terminate in (s)erver mode\n",
-    "\t\n",
-    "\n",
+    "\t"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "%connect_info"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "print(filename)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
     "#++++++++++++++++++++++++++++++++++++++++++\n",
     "#   Conduct the GP run                    |\n",
     "#++++++++++++++++++++++++++++++++++++++++++\n",
     "\n",
-    "gp.fx_karoo_gp(kernel, tree_type, tree_depth_base, tree_depth_max, tree_depth_min, tree_pop_max, gen_max, tourn_size, filename, evolve_repro, evolve_point, evolve_branch, evolve_cross, display, precision, swim, mode)\n"
+    "gp.fx_karoo_gp(kernel, tree_type, tree_depth_base, tree_depth_max, tree_depth_min, tree_pop_max, gen_max, tourn_size, filename, evolve_repro, evolve_point, evolve_branch, evolve_cross, display, precision, swim, mode)"
    ]
   }
  ],