Working internal/external links/refs etc

Makefile

@@ -4,9 +4,10 @@ all:
 	$(MAKE) clean
 	$(MAKE) -C src
 	mv src/*.pdf .
-	ps2pdf SNOUG.pdf SNOUG-web.pdf
+# ps2pdf breaks ToC and other internal links
+#	ps2pdf SNOUG.pdf SNOUG-web.pdf
 
 clean:
 	rm -f *.pdf
-	make clean -C src
+	$(MAKE) clean -C src
 

src/Makefile

@@ -1,6 +1,19 @@
 # Makefile
 
 all:
+	xelatex								\
+		-halt-on-error						\
+		-shell-escape						\
+		-interaction=nonstopmode				\
+		-no-pdf							\
+		SNOUG.tex
+	xelatex								\
+		-halt-on-error						\
+		-shell-escape						\
+		-interaction=nonstopmode				\
+		-no-pdf							\
+		SNOUG.tex
+	biber SNOUG
 	xelatex								\
 		-halt-on-error						\
 		-shell-escape						\
@@ -8,26 +21,6 @@ all:
 		-no-pdf							\
 		SNOUG.tex
 	makeindex SNOUG
-	xelatex								\
-		-halt-on-error						\
-		-shell-escape						\
-		-interaction=nonstopmode				\
-		-no-pdf							\
-		SNOUG.tex
-	biber SNOUG
-	xelatex								\
-		-halt-on-error						\
-		-shell-escape						\
-		-interaction=nonstopmode				\
-		-no-pdf							\
-		SNOUG.tex
-	biber SNOUG
-	xelatex								\
-		-halt-on-error						\
-		-shell-escape						\
-		-interaction=nonstopmode				\
-		-no-pdf							\
-		SNOUG.tex
 	xelatex								\
 		-halt-on-error						\
 		-shell-escape						\

src/SNOUG.tex

@@ -71,11 +71,8 @@ leftmargin=1cm,rightmargin=1cm
 \setmainfont[Ligatures=TeX]{lmroman12-regular.otf}
 \setmonofont{lmmono12-regular.otf}
 \setsansfont[Ligatures=TeX]{lmsans12-regular.otf}
-
 \usepackage[normalem]{ulem} % underline
-
 \usepackage{floatpag} % Full page figures without page numbers.
-
 %%% END PREAMBLE FONTS %%%
 
 %%% PAGE, STOCK, AND MARGIN SIZE %%%
@@ -106,17 +103,9 @@ leftmargin=1cm,rightmargin=1cm
 
 \usepackage[english]{babel}
 \usepackage{datetime} % Docs: /usr/share/doc/texlive-doc/latex/datetime/datetime.pdf
-%\usepackage{ucs} % incompatible with biblatex
-
-%%% PDFLATEX %%%
-%\usepackage{etex}
 
 %%% Not all features are used in XeTeX
 \usepackage[protrusion,babel,final]{microtype}
-%\usepackage[utf8x]{inputenc}
-
-% Docs: /usr/share/doc/texlive-doc/latex/reledmac/reledmac.pdf
-%\usepackage{reledmac}
 
 \usepackage{smartdiagram}
 \usesmartdiagramlibrary{additions}
@@ -187,14 +176,10 @@ leftmargin=1cm,rightmargin=1cm
 % http://www.tug.org/applications/hyperref/manual.html
 % /usr/share/doc/texlive-doc/latex/hyperref/hyperref.pdf
 \usepackage[bookmarksdepth=3, unicode, breaklinks=True, xetex, final=True, hyperfootnotes=True, hyperfigures=True, hyperindex=False, linktoc=all, colorlinks=true, anchorcolor=pink, citecolor=purple, linkcolor=red, urlcolor=orange, bookmarks=True, bookmarksopen=True]{hyperref}
-% destlabel
 \hypersetup{plainpages=False, backref=True, pagebackref=True, pdftitle={SatNOGS Optical Unofficial Guide}, pdfauthor={Jeff Moe}, pdfdisplaydoctitle=True  }
-\usepackage{hypcap}
-%\newcommand*{\main}[1]{\textbf{\hyperpage{#1}}}
 %%% END HYPERREF %%%
 
 %%% INDEX %%%
-%\usepackage{imakeidx}
 \usepackage{robustindex}
 \makeindex
 %%% END INDEX %%%